diff --git a/Bloxstrap/App.xaml.cs b/Bloxstrap/App.xaml.cs
index e0286b0..bc11e55 100644
--- a/Bloxstrap/App.xaml.cs
+++ b/Bloxstrap/App.xaml.cs
@@ -235,7 +235,6 @@ namespace Bloxstrap
                     ShowMessageBox($"{ProjectName} is currently running, likely as a background Roblox process. Please note that not all your changes will immediately apply until you close all currently open Roblox instances.", MessageBoxImage.Information);
 
                 new MainWindow().ShowDialog();
-                FastFlags.Save();
             }
             else if (LaunchArgs.Length > 0)
             {
diff --git a/Bloxstrap/ViewModels/MainWindowViewModel.cs b/Bloxstrap/ViewModels/MainWindowViewModel.cs
index 261548a..259c3f8 100644
--- a/Bloxstrap/ViewModels/MainWindowViewModel.cs
+++ b/Bloxstrap/ViewModels/MainWindowViewModel.cs
@@ -60,6 +60,7 @@ namespace Bloxstrap.ViewModels
             if (!App.IsFirstRun)
             {
                 App.ShouldSaveConfigs = true;
+                App.FastFlags.Save();
 
                 if (App.BaseDirectory != _originalBaseDirectory)
                 {